Fluent CRM automations to replace Woocommerce emails?

Hi guys, when you get an order in Woocommerce, Woo itself triggers an email to be sent to the customer for their confirmation. Does anyone know if its possible to replace the standard Woo emails using automations between Woo and Fluent CRM? I find the Woo email templates awful and am keen on the customization from Fluent:)
Cheers all, I like how everyone is building real business here.